En lille funktion som du nok kan bruge.
<HTML>
  <HEAD>
    <SCRIPT LANGUAGE="JavaScript">
      function NewWindow(mypage, myname, w, h, scroll) {
        var winl = (screen.width - w) / 2;
        var wint = (screen.height - h) / 2;
        winprops = 'height='+h+',width='+w+',top='+wint+',left='+winl+',scrollbars='+scroll+',resizable';
        win = window.open(mypage, myname, winprops);
        if (parseInt(navigator.appVersion) >= 4) {
          win.window.focus();
        }
      }
    </SCRIPT>
  </HEAD>
  
  <BODY>
    <A href="
http://www.yahoo.com/" onclick="NewWindow(this.href,'name','400','400','yes');return false;">Popup Yahoo.com</A>
  </BODY>
</HTML>